Protein structure datasets for ML training and benchmarking

github.com
github.com
openreview.net
openreview.net
Abstract: We present ProteinShake, ... or load an extensive set of pre-processed datasets from biological data...
github.com
github.com
ProteinNet is a standardized data set for machine learning of protein structure.
biomedcentral.com
biomedcentral.com
Background Rapid progress in deep learning has spurred its application to bioinformatics problems including
tensorflow.org
tensorflow.org
ProteinNet is a standardized data set for machine learning of protein structure.
nih.gov
nih.gov
In this article, we provide background information on the availability of protein structure data and the signi...
nature.com
nature.com
We find that AlphaFold 3 leads overall, yet antibody-antigen complexes, allosteric protein-ligand systems, and...
rsc.org
rsc.org
study benchmarked four protein structure prediction methods (Jpred4, PEP2D, PSIPRED, AlphaFold2)