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© The Author(s) 2025
1MTA-SZTE ‘Momentum’ Applied Ecology Research Group, University of Szeged, Szeged, Hungary. 2HUN-REN-UD Functional and Restoration Ecology
Research Group, Debrecen, Hungary. 3HUN-REN Centre for Agricultural Research, Institute for Soil Sciences, Budapest, Hungary. 4Institute of Ecology,
School of Sustainability, Leuphana University Lüneburg, Lüneburg, Germany. 5Avignon Univ, Aix Marseille Univ, CNRS, IRD, IMBE, Avignon, France.
6Department of Genetics, Ecology and Evolution, Federal University of Minas Gerais, Belo Horizonte, Brazil. 7Taxonomy and Macroecology, Royal
Botanic Garden Edinburgh, Edinburgh, UK. 8School of GeoSciences, University of Edinburgh, Edinburgh, UK. 9University of Debrecen, Department
of Ecology, Debrecen, Hungary. 10Balaton Limnological Research Institute, Tihany, Hungary. 11Department of Ecology, University of Szeged, Szeged,
Hungary. 12HUN-REN Centre for Ecological Research, Institute of Ecology and Botany, Vácrátót, Hungary. 13Department of Environmental and Landscape
Geography, Institute of Geography and Earth Sciences, ELTE Eötvös Loránd University, Budapest, Hungary. 14These authors contributed equally:
Csaba Tölgyesi, Nándor Csikós.
e-mail: [email protected]
Nature Geoscience
Article https://doi.org/10.1038/s41561-025-01742-z
Methods
Model construction
Ecosystem restoration can have a large variety of goals and natural
target vegetation states. For modelling purposes, we narrowed these
down to four broad ecosystem types: forest, shrubland, grassland and
wetland. These are also listed among the major land-cover categories
of Earth in the Copernicus Global Land Service–Land Cover raster
and available as fractional scores in pixels of 1-ha resolution (version
2019)59 (A in Fig. 1). Other land-cover categories in the database cor -
respond to either non-target ecosystem types for classical restoration
(cropland and built-up areas; but see Elmqvist et al. 60 and Klaus and
Kiehl61 for urban restoration initiatives) or natural ecosystem types with
little vegetation and therefore minor carbon sequestration rates
(bare/sparse vegetation, snow and ice and moss and lichen).
T o construct a predictive model for the potential global cover
distribution of the four selected ecosystem types, we followed mod-
elling principles in Bastin et al.9 For learning sites (that is, pixels with
known fractional cover scores of target ecosystems and environmental
predictors), we used their 78.850 pixels (100 m × 100 m) supplemented
with 20.000 more pixels with non-zero fractional cover percentages for
each ecosystem type (80.000 additional pixels in total) in protected
areas worldwide (except Antarctica) (B in Fig. 1). These latter pixels
were selected by first assigning every pixel in protected areas that
contained at least one of the target ecosystem types to a pool of each
ecosystem type (pixels could be allocated to more than one pool if they
contained more than one target ecosystem type), then we randomly
selected (without repetition) 20.000 pixels from each pool, leading to
158.850 pixels in total (Extended Data Fig. 6).
Fractional cover scores were kept for subsequent model construc-
tion, so pool assignment did not mean that a pixel was fully attributed
to an ecosystem type. The four pools were needed to enable similar
representations of each ecosystem type in the final set of learning sites.
We used the World Database on Protected Areas62 for the delineation
of protected areas. We included all listed protected areas (for exam-
ple, EU Natura 2000 areas) and did not restrict pixel selection to
strict nature reserves, as that procedure would exclude sustainable
coexistence of humans with nature, such as extensive grassland man-
agement or silvopastoral systems, which can also lead to high bio -
diversity and co-benefits for climate change mitigation/adaptation and
are often practical targets of restoration efforts63. Thus, our approach
includes components of land sharing and land sparing.
We allocated ten environmental predictors, including five climatic
(WorldClim database64; 1 km × 1 km resolution), three edaphic (Soil -
Grids250m65; 250 m × 250 m) and two topographic (GMTED2010 66;
250 m × 250 m) variables (Extended Data Fig. 9) to every learning site
(Supplementary Table 1) (C in Fig. 1). These environmental variables
proved to be reliable predictors in Bastin et al. 9. The differences in
the spatial resolution of the variables were handled with the bilinear
resampling technique of ESRI ArcMap 10.8. The bilinear resampling
technique involves attributing the average value of the four nearest
pixels within a 2 × 2 window to the relevant output pixel. This process
follows a bilinear mathematical function along both the horizontal
and vertical axes and is the commonly applied method for smoothly
transitioning continuous datasets lacking clear boundaries67.
We used Random Forest machine learning regression models
with fivefold cross-validations68 for training 500 trees of (potentially)
unlimited depth (D in Fig. 1). The number of variables to possibly split at
each node was set to three (that is, the default value for ten predictors).
The models were evaluated by regressing observed values by predicted
values (both of which were fractional) 69. Spatial distribution of the
model uncertainty was assessed by the standard deviation of the predic-
tions made by the five trained sub-models originated from the fivefold
cross-validation. According to the regression-based evaluation, the
models of forest, shrubland and grassland had high predictive power
(0.70 < R2 < 0.82), although at high (above 60%) observed shrubland
cover scores, the predictions tended to yield underestimations. This
was due to the low prevalence of such pixels in the datasets (approxi-
mately 0.1%), but because they are rare, uncertainties in their range do
not affect the overall predicted amount of shrubland (Extended Data
Fig. 7). The model for wetlands was fair (R2 = 0.32), with uncertainties
also caused by the rarity of high empirical cover scores. Models’ uncer-
tainty, estimated using standard deviations, was evenly distributed
across continents and biogeographic regions (Extended Data Fig. 8).
Predicting restoration targets
We predicted the potential forest, shrubland, grassland and wetland
cover distributions as the ensemble mean of the five trained sub-models
(according to the fivefold cross-validation) of each of the four ecosys-
tem models to a global grid of 1 × 1 km cells (henceforth ‘modelling
sites’) (E in Fig. 1). We also made predictions for a future period to take
into account the effect of changing climate on the potential cover of
ecosystem types, by updating the climatic predictors but leaving the
non-climatic predictors unchanged. We chose the period 2061–2080
because it is in the middle of our study period (between 2030 and 2100).
From among the global climate models of the Coupled Model Intercom-
parison Project Phase 6 (CMIP6)70 having predictions in the WorldClim
database64, we selected EC-Earth3-Veg model71, which has a medium
(that is, 4.33) effective climate sensitivity value72 and its predecessor
(that is, EC-Earth) has been successfully used for carbon sequestration
prediction73. Among the Shared Socioeconomic Pathways (SSPs), we
considered SSP1–2.6, SSP2–4.5, SSP3–7.0 and SSP5–8.5.
The differences in the spatial resolution of the variables were
handled with the bilinear resampling technique of ESRI ArcMap 10.8.
Due to the independent construction of the four ecosystem models,
the predicted total cover could exceed 100%. In such cases, we pro -
portionately reduced the cover of each ecosystem type to sum up to
100% (for example, a prediction of 60% forest and 60% grassland was
reduced to 50% each).
Once having the potential distribution of target ecosystems
(in percentage fractions for every modelling site), we compared them
to the present cover of the target ecosystems using the Copernicus
Global Land Service–Land Cover raster (version 2019)59. We used the
difference to identify degraded areas globally (F in Fig. 1).
However, built-up areas are rarely available for restoration pur-
poses, so we removed them (their fractional cover from the modelling
sites) from subsequent calculations. Likewise, restoration activities
cannot be implemented in all agricultural areas due to their role in
food security. Therefore, we identified intensive agricultural areas
using the Land Use Systems of the World 1.1. database74 and removed
all corresponding modelling sites (G in Fig. 1). Fractional removal was
not possible due to the data structure of the database. We considered
the following categories as intensive agriculture: rain-fed crops, crops
with moderate or higher livestock density, crops with high livestock
density and large-scale irrigation agriculture.
It was common that a currently natural ecosystem type in a parti-
cular location is not the potential type in the future predictions,
indicating that state transitions are expected worldwide in the near
future. These can take place spontaneously but can also be assisted
by landscape and conservation management (for example, to prevent
catastrophic, pyric transitions from forests to savannahs by allowing
a smooth transition with management). We did not lump them with
restoration but handled them separately as ‘state transitions’ , with
additional (often negative) effects on carbon sequestration rates.
We finally had five potential cover values (one based on current
and four based on future climates) for every target ecosystem type
in all modelling sites, covering the terrestrial surface of Earth that is
available for restoration (or prone to state transitions). Our model did
not identify specific mosaic ecosystems (for example, savannah-forest
mosaics) but handled them adequately, because the ecosystem-type
cover values were proportional, meaning that such a modelling site,
Nature Geoscience
Article https://doi.org/10.1038/s41561-025-01742-z
for instance, contained certain proportions of forest, shrubland and
grassland alike. These constituting ecosystem types were then used
separately in subsequent carbon gain calculations.
Predicting carbon gain potential
As the next step, we assigned carbon sequestration rates (t ha −1 yr−1)
to the modelling sites. Carbon sequestration rates of a target eco -
system type can vary greatly among biomes (for example, tropical
rainforest vs boreal forest). T o account for this heterogeneity, we first
removed all modelling sites located in polar or arid biomes using the
‘Resolve EcoRegions2017’ database 75 (H in Fig. 1 ), because these cli -
mates allow very low primary productivity and therefore low carbon
sequestration rates. Then, we combined the four target ecosystem
types with the remaining biomes listed in the database, resulting in
12 biome-specific ecosystem types: boreal forest, temperate forest,
tropical/subtropical dry forest, tropical/subtropical moist forest,
mangrove forest/shrubland, boreal/temperate shrubland (including
heathland), tropical/subtropical shrubland, boreal/temperate grass-
land, tropical/subtropical grassland, boreal wetland (predominantly
peatland), temperate wetland (including salt marshes) and tropical/
subtropical wetland (I in Fig. 1 ). For boreal, temperate, tropical/sub-
tropical dry forest and tropical/subtropical moist forests, we adopted
the sequestration rates from Cook-Patton et al.76, who compiled and
summarized over ten thousand records from regenerating forests.
They provided ecoregion-specific rates, which we averaged across our
broader biome-specific forest ecosystem types. For open ecosystems,
we heavily relied on the database of the European Environmental
Agency77. For biome-specific ecosystem types that were not included
in any of these databases or had a poor coverage in the European Envi-
ronmental Agency’s database, we searched for published literature
records that considered total ecosystem carbon sequestration rates,
including both above- and belowground biomass and soil organic
carbon, except in tropical/subtropical grasslands, where frequent
fires (and herbivory) preclude the formation of a stable aboveground
carbon sink. So in their case, we used only records from belowground
compartments (Extended Data Fig. 9 and J in Fig. 1).
Once having the carbon sequestration rates of the 12 biome-specific
ecosystem types, we calculated the carbon sequestration rate of
each modelling site after the implementation of restoration or the com-
bination of restoration and state transitions in future-climate-based
predictions (K in Fig. 1). T o get the carbon gain potential of modelling
sites, we calculated their current, pre-restoration sequestration rate (L
in Fig. 1) and subtracted this from the post-restoration rate (plus state
transition, where applicable) (M in Fig. 1). We assumed 0 t C ha−1 seques-
tration to non-target ecosystem types (for example, bare soil surface
and snow and ice). In a few rare cases we predicted negative carbon gain
based on current climates, which can happen if, for example, current
forest cover is locally higher for some reason than predicted by our
model. We ignored these rare cases but negative rates owing to state
transitions in future-climate-based predictions were retained. We used
carbon gain values based on current climates to estimate the impact
of ecosystem restoration on carbon emissions projected by Shared
Socioeconomic Pathways (SSP1–2.6, SSP2–4.5, SSP3–7.0, SSP5–8.5)
between 2030 and 2100 (SSP Public Database 2.046).
Besides the global sequestration potential until 2100, we also
identified priority regions for restoration where the highest carbon
gain can be achieved first. Selecting the modelling sites with the top
carbon gain values is a possible option, but they may be scattered across
the world and due to their relatively small size are not especially suitable
for planning global restoration strategies. Therefore, we used a coarser
global grid of 100 × 100 km cells (22.880 cells in total). We ranked these
large grid cells according to their total potential carbon gain as the
summed values from the included modelling sites and set the cut-off
at that rank above which the cells contained 20% of all restorable land
area, that is, the 80th percentile. This way, we identified regions where
the highest carbon sequestration can be achieved until 2030, which
was set as a milestone year to restore the first 20% of the available land.
This selection method yielded 2,669 priority regions (corresponding
to 11.7% of all grid cells). We performed prioritization using only the
present-climate-based predictions, because of the very low overall
carbon gains predicted when future climates were considered.
Data preparation and model construction were done in ESRI
ArcMap 10.8 and R 4.2.0 statistical software, respectively. We used
the R packages ‘groupdata2’ , ‘ranger’ , ‘raster’ and ‘sf’ for model con-
struction and predictions.
Limitations of the model
Using carbon sequestration rates instead of the carbon stocks of
mature stands is a major improvement of our model compared to previ-
ous ones, but we used linear functions, although deviations from this
can happen during stand maturation in some ecosystem types78. The
lack of global data across different biomes precluded us from taking
into account these nonlinearities. Our input dataset structure allowed
us to consider restoration actions that entailed a change in vegetation
or ecosystem type through the restoration, although this is not a pre-
requisite for ecosystem restoration and for carbon gain (for example,
restoration of intensively managed grasslands to natural grasslands
or tree plantations to forests, although these actions are sometimes
difficult to distinguish from improved management). However, using
proportional ecosystem type cover values alleviated this deficiency
in mosaic ecosystems if the degradation manifested in changes in the
proportions of constituting ecosystem types; so, for example, our
model included the restoration of degraded savannah-forest mosaics
to pristine ones with the original ecosystem-type cover proportions.
Furthermore, future changes of some input data and other relevant
trends (for example, changes in the area of intensive agriculture, biome
boundary shifts and the effects of elevating CO2 and changing climate
in general on assimilation, decomposition, fire frequency) were not
taken into account due to high uncertainties, but this also gives room
for future research. Lastly, the 1-km2 model resolution does not mean
that the output maps are directly usable for local-scale restoration
planning because the predictors are often extrapolated values that
are not sensitive enough to fine-scale environmental heterogeneity
(topography, soil and so on), which cannot be ignored in small-scale
planning.
Data availability
Data used in this study are available in Extended Data Fig. 9 and
Extended Data Table 1, Supplementary Data Table 1 and in the free
databases cited. Processed data and models are available via Dryad
at https://doi.org/10.5061/dryad.ksn02v7g4 (ref. 79). Source data are
provided with this paper.
Code availability
R codes to prepare the models are available via Dryad at https://doi.org/
10.5061/dryad.ksn02v7g4 (ref. 79).
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